CAS 880129-82-8

20-azido-3,6,9,12,15,18-hexaoxaicosan-1-oic acid

Azides & Alkyne Building Blocks

About This Compound

Azides and alkynes are the foundational reagents of copper-catalyzed azide-alkyne cycloaddition (CuAAC) — the quintessential click reaction that yields 1,2,3-triazole linkages with near-perfect regioselectivity. Azide-functionalized building blocks are also compatible with strain-promoted azide-alkyne cycloaddition (SPAAC) for copper-free bioorthogonal applications. These compounds are essential tools for bioconjugation, drug discovery, materials science, and chemical proteomics.

Related Reactions: CuAAC · SPAAC · Staudinger Ligation
Molecular FormulaC14H27N3O8 Molecular Weight365.384 g/mol InChIKeyGXXXKIVNLFPCAG-UHFFFAOYSA-N CAS Registry880129-82-8 Literature Refs42 references

Synthesis Routes

Showing 3 of 11 available routes, sorted by yield.

Route 1

1 step Yield: 520 mg
20-azido-3,6,9,12,15,18-hexaoxaicosan-1-oic acid
CAS 880129-82-8
C14H27N3O8
+
(2S)-2-amino-N-[(1S)-2-[4-(hydroxymethyl)anilino]-1-methyl-2-oxoethyl]-3-methylbutanamide
CAS 1343476-44-7
C15H23N3O3
20-azido-3,6,9,12,15,18-hexaoxaicosan-1-oic acid
Conditions With 4-(4,6-dimethoxy-1,3,5-triazin-2-yl)-4-methylmorpholinium chloride at 20℃; for 1h;
Reference Current Patent Assignee: SUZHOU YILIAN BIOLOGICAL MEDICINE - CN121422249, 2026, A Location in patent: Paragraph 0090; 0092-0093
Source Reaxys

Route 2

1 step Yield: 260 mg
(2S,4R)-1-((S)-2-amino-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide hydrochloride
CAS 1448189-80-7
C22H30N4O3S*(x)ClH
+
20-azido-3,6,9,12,15,18-hexaoxaicosan-1-oic acid
CAS 880129-82-8
C14H27N3O8
20-azido-3,6,9,12,15,18-hexaoxaicosan-1-oic acid
Conditions With N-ethyl-N,N-diisopropylamine; HATU In N,N-dimethyl-formamide at 0 - 20℃; for 1h;
Reference Current Patent Assignee: YALE UNIVERSITY - WO2017/30814, 2017, A1 Location in patent: Paragraph 00248
Source Reaxys

Route 3

1 step Yield: 100%
ethyl 20-azido-3,6,9,12,15,18-hexaoxaicosan-1-oate
CAS 1254951-78-4
C16H31N3O8
20-azido-3,6,9,12,15,18-hexaoxaicosan-1-oic acid
Conditions With sodium hydroxide In methanol; water at 20℃; Inert atmosphere;
Reference Kachbi-Khelfallah, Souad; Monteil, Maelle; Cortes-Clerget, Margery; Migianu-Griffoni, Evelyne; Pirat, Jean-Luc; Gager, Olivier; Deschamp, Julia; Lecouvey, Marc [Beilstein Journal of Organic Chemistry, 2016, vol. 12, p. 1366 - 1370] DOI
Source Reaxys
8 additional routes available in the full dataset. Contact us for complete synthesis route data.

Related Compounds

Other Azides & Alkyne Building Blocks in our catalog:

Frequently Asked Questions

Are organic azides safe to handle?

Low-molecular-weight organic azides (especially those with high nitrogen content) can be shock-sensitive and potentially explosive. Compounds where the ratio (C + O) / N < 3 should be handled with extreme caution. For routine lab work, azides with molecular weight > 200 Da and low nitrogen-to-carbon ratios are generally safe under standard conditions. Always scale up cautiously and avoid heating neat azides.

What copper catalyst systems work best for CuAAC?

The most widely used CuAAC catalyst systems include CuSO₄/sodium ascorbate (in situ generation of Cu(I)), CuI with THPTA or BTTAA ligands for biological applications, and pre-formed Cu(I) complexes such as [Cu(CH₃CN)₄]PF₆. Ligand choice is critical for biocompatibility — BTTAA and THPTA protect biomolecules from Cu(I)-mediated oxidative damage.

How should alkyne compounds be stored?

Terminal alkynes are susceptible to oxidative coupling (Glaser coupling) when exposed to air and copper contaminants. Store under inert atmosphere at −20 °C. Solid alkynes are generally more stable than liquid ones. Cyclooctyne derivatives (DIBO, DBCO, BCN) are light-sensitive and should be stored in amber vials at −20 °C.

Can I use CuAAC for live-cell labeling?

Standard CuAAC is generally not suitable for live-cell applications due to Cu(I) cytotoxicity. For intracellular labeling, use copper-free alternatives such as SPAAC (strain-promoted azide-alkyne cycloaddition with DBCO/DIBO cyclooctynes) or IEDDA (tetrazine ligation), which proceed rapidly under physiological conditions without toxic catalysts.

How do I verify successful triazole formation?

The 1,4-disubstituted 1,2,3-triazole formed in CuAAC shows a characteristic ¹H NMR singlet at δ 7.5–8.5 ppm (triazole C5-H). In mass spectrometry, look for the expected [M+H]⁺ with a mass equal to the sum of azide + alkyne minus N₂ (28 Da). HPLC analysis should show disappearance of starting materials and a single new product peak.

Last updated: July 27, 2026